SNP Profiles of GU 123 /C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
1._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
2._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
3._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
4._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
5._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
6._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
7._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
8._GC-01-095-5-12	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
9._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
10._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
11._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
12._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
13._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
14._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
15._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
16._GU_123_/C	CC	GG	GG	CC	TT	TT	TT	CC	CC	AA	GG	CC	AA	CT
17._GC-01-95-5-12	GG	GG	CC	GG	AA	AA	AA	_	_	AA	GG	GG	AA	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
1._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
2._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
3._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
4._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
5._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
6._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
7._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
8._GC-01-095-5-12	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
9._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
10._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
11._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
12._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
13._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
14._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
15._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
16._GU_123_/C	AA	GG	CC	CC	GG	GG	AA	TT	CC	CC	GG	CC	AA	AG
17._GC-01-95-5-12	AA	GG	GG	GG	CC	CC	_	AA	CC	CC	CC	_	AA	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
1._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
2._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
3._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
4._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
5._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
6._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
7._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
8._GC-01-095-5-12	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
9._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
10._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
11._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
12._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
13._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
14._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
15._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
16._GU_123_/C	GG	AA	CC	GG	CC	AA	TT	TT	AA	TT	GG	X_X	X_X	X_X
17._GC-01-95-5-12	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X	X_X

Input profile: GU_123_/C

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Mars Center for Cocoa Science, Brazil

Location: 1512 9

Dapeng Zhang, 2016

1._GU_123_/C GC-01-095-5-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

2._GU_123_/C GC-01-095-5-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

3._GU_123_/C GC-01-095-5-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._GU_123_/C GC-01-095-5-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

5._GU_123_/C GC-01-095-5-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

6._GU_123_/C GC-01-095-5-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._GU_123_/C GC-01-095-5-12

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._GU_123_/C GC-01-095-5-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 4 > FP3

Dapeng Zhang, 2016

10._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 3

Dapeng Zhang, 2016

12._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 6

Dapeng Zhang, 2016

13._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 14

Dapeng Zhang, 2016

14._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 1 > FP

Dapeng Zhang, 2016

15._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 13 > FP4

Dapeng Zhang, 2016

16._GU_123_/C

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 44

Dapeng Zhang, 2016

17._GU_123_/C GC-01-95-5-12

47.1 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25